Dave,
I have an interest in a plastics fabricating company and I do all the engineering design , we make security screens for banks out of Lexan , we have in the past made security screens for taxis. I have been involved in plastic fabrication for about 13 years.
WE conducted the world first crash test with a type 3 dummy in the rear seat to demonstrate the crash worthiness of a taxi security screen and passed first time, I used acrylic sheet , our opposition used Polycarbonate, we got the government contract !!
Certainly polycarbonate has some advantages over acrylic, however, you are dealing with legislative requirements which mandate glazing materials conform to certain standards. The mere fact that persons are constructing a vehicle for them selves does not place them above the law. I am not saying that polycarbonate is better that acrylic or that acrylic is better than polycarbonate, what i am saying is that if you use polycarbonate make sure it complies to relevant standards.
Personally I would use a complying material even if it is inferior to like products.